2016 Publications
Abascal F, Corvelo A, Cruz F, Villanueva-Cañas JL, Vlasova A, Marcet-Houben M, Martínez-Cruz B, Cheng JY, Prieto P, Quesada V, Quilez J, Li G, García F, Rubio-Camarillo M, Frias L, Ribeca P, Capella-Gutiérrez S, Rodríguez JM, Câmara F, Lowy E, Cozzuto L, Erb I, Tress ML, Rodriguez-Ales JL, Ruiz-Orera J, Reverter F, Casas-Marce M, Soriano L, Arango JR, Derdak S, Galán B, Blanc J, Gut M, Lorente-Galdos B, Andrés-Nieto M, López-Otín C, Valencia A, Gut I, García JL, Guigó R, Murphy WJ, Ruiz-Herrera A, Marques-Bonet T, Roma G, Notredame C, Mailund T, Albà MM, Gabaldón T, Alioto T, Godoy JA. 2016. Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx. Genome Biology, 17(1). DOI:10.1186/s13059-016-1090-1
Adamowicz SJ, Chain FJ, Clare EL, Deiner K, Dincă V, Elías-Gutiérrez M, Hausmann A, Hogg ID, Kekkonen M, Lijtmaer DA, Naaum A, Steinke D, Valdez-Moreno M, Van der Bank M, Wilson JJ, Xu J. 2016. From Barcodes to Biomes: Special Issues from the 6th International Barcode of Life Conference. Genome, 59(9):v-ix. DOI:10.1139/gen-2016-0159
Andújar C, Faille A, Pérez-González S, Zaballos JP, Vogler AP, Ribera I. 2016. Gondwanian relicts and oceanic dispersal in a cosmopolitan radiation of euedaphic ground beetles. Molecular Phylogenetics and Evolution, 99:235-246. DOI:10.1016/j.ympev.2016.03.013
Aterido A, Julià A, Ferrándiz C, Puig L, Fonseca E, Fernández-López E, Dauden E, Sánchez-Carazo JL, López-Estebaranz JL, Moreno-Ramírez D, Vanaclocha F, Herrera E, de la Cueva P, Dand N, Palau N, Alonso A, López-Lasanta M, Tortosa R, García-Montero A, Codó L, Gelpí JL, Bertranpetit J, Absher D, Capon F, Myers RM, Barker JN, Marsal S. 2016. Genome-Wide Pathway Analysis Identifies Genetic Pathways Associated with Psoriasis. Journal of Investigative Dermatology, 136(3):593-602. DOI:10.1016/j.jid.2015.11.026
Bonforti A, Duran-Nebreda S, Montañez R, Solé R. 2016. Spatial self-organization in hybrid models of multicellular adhesion. Chaos, 26(10). DOI:10.1063/1.4965992
Bruno D, Gutiérrez-Cánovas C, Sánchez-Fernández D, Velasco J, Nilsson C. 2016. Impacts of environmental filters on functional redundancy in riparian vegetation. Journal of Applied Ecology, 53(3):846-855. DOI:10.1111/1365-2664.12619
Buzdugan L, Kalisch M, Navarro A, Schunk D, Fehr E, Bühlmann P. 2016. Assessing statistical significance in multivariable genome wide association analysis. Bioinformatics, 32(13):1990-2000. DOI:10.1093/bioinformatics/btw128
Cagan A, Theunert C, Laayouni H, Santpere G, Pybus M, Casals F, Prüfer K, Navarro A, Marques-Bonet T, Bertranpetit J, Andrés AM. 2016. Natural selection in the great apes. Molecular Biology and Evolution, 33(12):3268-3283. DOI:10.1093/molbev/msw215
Calafell F, Anglada R, Bonet N, González-Ruiz M, Prats-Muñoz G, Rasal R, Lalueza-Fox C, Bertranpetit J, Malgosa A, Casals F. 2016. An assessment of a massively parallel sequencing approach for the identification of individuals from mass graves of the Spanish Civil War (1936–1939). Electrophoresis, 37(21):2841-2847. DOI:10.1002/elps.201600180
Carbonell-Ballestero M, Garcia-Ramallo E, Montañez R, Rodriguez-Caso C, Macía J. 2016. Dealing with the genetic load in bacterial synthetic biology circuits: Convergences with the Ohm’s law. Nucleic Acids Research, 44(1):496-507. DOI:10.1093/nar/gkv1280
Carranza S, Simó-Riudalbas M, Jayasinghe S, Wilms T, Els J. 2016. Microendemicity in the northern Hajar Mountains of Oman and the United Arab Emirates with the description of two new species of geckos of the genus Asaccus (Squamata: Phyllodactylidae). PeerJ, 2016(8). DOI:10.7717/peerj.2371
Carranza S, Bauer AM. 2016. Margarita Metallinou (1985-2015). Zootaxa, 4132(4):598-600. DOI:10.11646/zootaxa.4132.4.13
Carvalho J, Sotelo G, Galindo J, Faria R. 2016. Genetic characterization of flat periwinkles (Littorinidae) from the Iberian Peninsula reveals interspecific hybridization and different degrees of differentiation. Biological Journal of the Linnean Society, 118(3):503-519. DOI:10.1111/bij.12762
Chavan R, Shinde P, Girkar K, Madage R, Chowdhary A. 2016. Assessment of Anti-Influenza activity and hemagglutination inhibition of Plumbago indica and Allium sativum extracts. Pharmacognosy Research, 8(2):105. DOI:10.4103/0974-8490.172562
Colobran R, Franco-Jarava C, Martín-Nalda A, Baena N, Gabau E, Padilla N, de la Cruz X, Pujol-Borrell R, Comas D, Soler-Palacín P, Hernández-González M. 2016. Novel Mutations Causing C5 Deficiency in Three North-African Families. Journal of Clinical Immunology, 36(4):388-396. DOI:10.1007/s10875-016-0275-4
Corrales E, Navarro A, Cuenca P, Campos D. 2016. Candidate gene study reveals DRD1 and DRD2 as putative interacting risk factors for youth depression. Psychiatry Research, 244:71-77. DOI:10.1016/j.psychres.2016.07.032
Dapporto L, Stefanini I, Rivero D, Polsinelli M, Capretti P, De Marchi P, Viola R, Turillazzi S, Cavalieri D. 2016. Social wasp intestines host the local phenotypic variability of Saccharomyces cerevisiae strains. Yeast, 33(7):277-287. DOI:10.1002/yea.3173
de Lorenzo V, Marlière P, Solé R. 2016. Bioremediation at a global scale: from the test tube to planet Earth. Microbial Biotechnology, 9(5):618-625. DOI:10.1111/1751-7915.12399
de Manuel M, Kuhlwilm M, Frandsen P, Sousa VC, Desai T, Prado-Martinez J, Hernandez-Rodriguez J, Dupanloup I, Lao O, Hallast P, Schmidt JM, Heredia-Genestar JM, Benazzo A, Barbujani G, Peter BM, Kuderna LF, Casals F, Angedakin S, Arandjelovic M, Boesch C, Kühl H, Vigilant L, Langergraber K, Novembre J, Gut M, Gut I, Navarro A, Carlsen F, Andrés AM, Siegismund HR, Scally A, Excoffier L, Tyler-Smith C, Castellano S, Xue Y, Hvilsom C, Marques-Bonet T. 2016. Chimpanzee genomic diversity reveals ancient admixture with bonobos. Science, 354(6311):477-481. DOI:10.1126/science.aag2602
de Miguel C, Linsler F, Casanova J, Franch-Marro X. 2016. Genetic basis for the evolution of organ morphogenesis: The case of spalt and cut in the development of insect trachea. Development (Cambridge), 143(19):3615-3622. DOI:10.1242/dev.134924
de Pous P, Simó-Riudalbas M, Els J, Jayasinghe S, Amat F, Carranza S. 2016. Phylogeny and biogeography of Arabian populations of the Persian Horned Viper Pseudocerastes persicus (Duméril, Bibron & Duméril, 1854). Zoology in the Middle East, 62(3):231-238. DOI:10.1080/09397140.2016.1202896
de Pous P, Machado L, Metallinou M, Červenka J, Kratochvíl L, Paschou N, Mazuch T, Šmíd J, Simó-Riudalbas M, Sanuy D, Carranza S. 2016. Taxonomy and biogeography of Bunopus spatalurus (Reptilia; Gekkonidae) from the Arabian Peninsula. Journal of Zoological Systematics and Evolutionary Research, 54(1):67-81. DOI:10.1111/jzs.12107
Dopazo J, Amadoz A, Bleda M, Garcia-Alonso L, Alemán A, García-García F, Rodriguez JA, Daub JT, Muntané G, Rueda A, Vela-Boza A, López-Domingo FJ, Florido JP, Arce P, Ruiz-Ferrer M, Méndez-Vidal C, Arnold TE, Spleiss O, Alvarez-Tejado M, Navarro A, Bhattacharya SS, Borrego S, Santoyo-López J, Antiñolo G. 2016. 267 Spanish Exomes Reveal Population-Specific Differences in Disease-Related Genetic Variation. Molecular Biology and Evolution, 33(5):1205-1218. DOI:10.1093/molbev/msw005
Duran-Nebreda S, Solé R V. 2016. Toward Synthetic Spatial Patterns in Engineered Cell Populations with Chemotaxis. ACS Synthetic Biology, 5(7):654-661. DOI:10.1021/acssynbio.5b00254
Duran-Nebreda S, Bonforti A, Montañez R, Valverde S, Solé R. 2016. Emergence of proto-organisms from bistable stochastic differentiation and adhesion. Journal of the Royal Society Interface, 13(117). DOI:10.1098/rsif.2016.0108
Elias-Neto M, Belles X. 2016. Tergal and pleural structures contribute to the formation of ectopic prothoracic wings in cockroaches. Royal Society Open Science, 3(8). DOI:10.1098/rsos.160347
Engelken J, Espadas G, Mancuso FM, Bonet N, Scherr AL, Jímenez-Álvarez V, Codina-Solà M, Medina-Stacey D, Spataro N, Stoneking M, Calafell F, Sabidó E, Bosch E. 2016. Signatures of evolutionary adaptation in quantitative trait loci influencing trace element homeostasis in liver. Molecular Biology and Evolution, 33(3):738-754. DOI:10.1093/molbev/msv267
Esquerdo M, Grau-Bové X, Garanto A, Toulis V, Garcia-Monclús S, Millo E, López-Iniesta MJ, Abad-Morales V, Ruiz-Trillo I, Marfany G. 2016. Expression Atlas of the Deubiquitinating Enzymes in the Adult Mouse Retina, Their Evolutionary Diversification and Phenotypic Roles. PLoS ONE, 11(3):1-18. DOI:10.1371/journal.pone.0150364
Faherty SL, Luis Villanueva-Cañas J, Klopfer PH, Albà MM, Yoder AD. 2016. Gene expression profiling in the hibernating primate, Cheirogaleus medius. Genome Biology and Evolution, 8(8):2413-2426. DOI:10.1093/gbe/evw163
Fan Z, Silva P, Gronau I, Wang S, Armero AS, Schweizer RM, Ramirez O, Pollinger J, Galaverni M, Ortega Del-Vecchyo D, Du L, Zhang W, Zhang Z, Xing J, Vilà C, Marques-Bonet T, Godinho R, Yue B, Wayne RK. 2016. Worldwide patterns of genomic variation and admixture in gray wolves. Genome Research, 26(2):163-173. DOI:10.1101/gr.197517.115
Fernandez-Nicolas A, Belles X. 2016. CREB-binding protein contributes to the regulation of endocrine and developmental pathways in insect hemimetabolan pre-metamorphosis. Biochimica et Biophysica Acta - General Subjects, 1860(3):508-515. DOI:10.1016/j.bbagen.2015.12.008
Fernández-Sampedro MA, Invergo BM, Ramon E, Bertranpetit J, Garriga P. 2016. Functional role of positively selected amino acid substitutions in mammalian rhodopsin evolution. Scientific Reports, 6:1-13. DOI:10.1038/srep21570
Flesch BK, Morar B, Comas D, Muñiz-Diaz E, Nogués N, Kalaydjieva L. 2016. The AQP1 del601G mutation in different European Romani (Gypsy) populations. Blood Transfusion, 14(6):580-581. DOI:10.2450/2016.0274-15
Freedman AH, Schweizer RM, Ortega-Del Vecchyo D, Han E, Davis BW, Gronau I, Silva PM, Galaverni M, Fan Z, Marx P, Lorente-Galdos B, Ramirez O, Hormozdiari F, Alkan C, Vilà C, Squire K, Geffen E, Kusak J, Boyko AR, Parker HG, Lee C, Tadigotla V, Siepel A, Bustamante CD, Harkins TT, Nelson SF, Marques-Bonet T, Ostrander EA, Wayne RK, Novembre J. 2016. Demographically-Based Evaluation of Genomic Regions under Selection in Domestic Dogs. PLoS Genetics, 12(3):1-23. DOI:10.1371/journal.pgen.1005851
Froufe E, Prié V, Faria J, Ghamizi M, Gonçalves DV, Gürlek ME, Karaouzas I, Kebapçi Ü, Şereflişan H, Sobral C, Sousa R, Teixeira A, Varandas S, Zogaris S, Lopes-Lima M. 2016. Phylogeny, phylogeography, and evolution in the Mediterranean region: News from a freshwater mussel (Potomida, Unionida). Molecular Phylogenetics and Evolution, 100:322-332. DOI:10.1016/j.ympev.2016.04.030
Froufe E, Gonçalves DV, Teixeira A, Sousa R, Varandas S, Ghamizi M, Zieritz A, Lopes-Lima M. 2016. Who lives where? Molecular and morphometric analyses clarify which Unio species (Unionida, Mollusca) inhabit the southwestern Palearctic. Organisms Diversity and Evolution, 16(3):597-611. DOI:10.1007/s13127-016-0262-x
Gallego A, Melé M, Balcells I, García-Ramallo E, Torruella-Loran I, Fernández-Bellon H, Abelló T, Kondova I, Bontrop R, Hvilsom C, Navarro A, Marquès-Bonet T, Espinosa-Parrilla Y. 2016. Functional Implications of Human-Specific Changes in Great Ape microRNAs. PLoS ONE, 11(4):1-20. DOI:10.1371/journal.pone.0154194
Garcia-Casademont E, Steels L. 2016. Insight grammar learning. Journal of Cognitive Science, 17(1):27-62. DOI:10.17791/jcs.2016.17.1.27
Garcia-Porta J, Šmíd J, Sol D, Fasola M, Carranza S. 2016. Testing the island effect on phenotypic diversification: Insights from the Hemidactylus geckos of the Socotra Archipelago. Scientific Reports, 6(March):1-12. DOI:10.1038/srep23729
Garcia-Porta J, Morales HE, Gómez-Díaz E, Sindaco R, Carranza S. 2016. Patterns of diversification in islands: A comparative study across three gecko genera in the Socotra Archipelago. Molecular Phylogenetics and Evolution, 98:288-299. DOI:10.1016/j.ympev.2016.02.007
García-Vázquez D, Bilton DT, Alonso R, Benetti CJ, Garrido J, Valladares LF, Ribera I. 2016. Reconstructing ancient Mediterranean crossroads in Deronectes diving beetles. Journal of Biogeography, 43(8):1533-1545. DOI:10.1111/jbi.12740
García-Vázquez D, Ribera I. 2016. The origin of widespread species in a poor dispersing lineage (diving beetle genus Deronectes). PeerJ, 2016(9). DOI:10.7717/peerj.2514
Gelabert P, Sandoval-Velasco M, Olalde I, Fregel R, Rieux A, Escosa R, Aranda C, Paaijmans K, Mueller I, Gilbert MT, Lalueza-Fox C. 2016. Mitochondrial DNA from the eradicated European Plasmodium vivax and P. falciparum from 70-year-old slides from the Ebro Delta in Spain. Proceedings of the National Academy of Sciences of the United States of America, 113(41):11495-11500. DOI:10.1073/pnas.1611017113
Gold DA, Grabenstatter J, De Mendoza A, Riesgo A, Ruiz-Trillo I, Summons RE. 2016. Sterol and genomic analyses validate the sponge biomarker hypothesis. Proceedings of the National Academy of Sciences of the United States of America, 113(10):2684-2689. DOI:10.1073/pnas.1512614113
Gómez-Zurita J, Cardoso A, Coronado I, De la Cadena G, Jurado-Rivera JA, Maes JM, Montelongo T, Nguyen DT, Papadopoulou A. 2016. High-throughput biodiversity analysis: Rapid assessment of species richness and ecological interactions of Chrysomelidae (Coleoptera) in the tropics. ZooKeys, 2016(597):3-26. DOI:10.3897/zookeys.597.7065
Gómez-Zurita J. 2016. Systematic revision of Calligrapha Chevrolat (Coleoptera: Chrysomelidae) with pale spots on dark elytra and description of two new species. Zootaxa, 4072(1):61. DOI:10.11646/zootaxa.4072.1.3
Gonçalves DV, Pereira P, Godinho R, Lopes S, Velo-Antón G, Brito JC. 2016. Development of 23 microsatellite loci for Boulenger’s agama (Agama boulengeri) with partial cross-amplification in other Agama species. Amphibia Reptilia, 37(2):246-252. DOI:10.1163/15685381-00003048
Gutiérrez D, Vila R, Wilson RJ. 2016. Asymmetric constraints on limits to species ranges influence consumer-resource richness over an environmental gradient. Global Ecology and Biogeography, 25(12):1477-1488. DOI:10.1111/geb.12510
Haber M, Mezzavilla M, Xue Y, Comas D, Gasparini P, Zalloua P, Tyler-Smith C. 2016. Genetic evidence for an origin of the Armenians from Bronze Age mixing of multiple populations. European Journal of Human Genetics, 24(6):931-936. DOI:10.1038/ejhg.2015.206
Hanappe P, Dunlop R, Maes A, Steels L, Duval N. 2016. Agroecology: A Fertile Field for Human Computation. Human Computation, 3(1):225-233. DOI:10.15346/hc.v3i1.13
Hartasánchez DA, Brasó-Vives M, Fuentes-Díaz J, Vallès-Codina O, Navarro A. 2016. SeDuS: Segmental duplication simulator. Bioinformatics, 32(1):148-150. DOI:10.1093/bioinformatics/btv481
Hawlitschek O, Morinière J, Dunz A, Franzen M, Rödder D, Glaw F, Haszprunar G. 2016. Comprehensive DNA barcoding of the herpetofauna of Germany. Molecular Ecology Resources, 16(1):242-253. DOI:10.1111/1755-0998.12416
Hawlitschek O, Scherz MD, Straube N, Glaw F. 2016. Resurrection of the Comoran fish scale gecko Geckolepis humbloti Vaillant, 1887 reveals a disjunct distribution caused by natural overseas dispersal. Organisms Diversity and Evolution, 16(1):289-298. DOI:10.1007/s13127-015-0255-1
Hawlitschek O, Wang-Claypool CY, Scherz MD, Montfort L, Soumille O, Glaw F. 2016. New size record of the snake genus Liophidium by the island endemic L. Mayottensis (Squamata, lamprophiidae). Spixiana, 39(2):287-288.
Hernández-Roldán JL, Dapporto L, Dincă V, Vicente JC, Hornett EA, Šíchová J, Lukhtanov VA, Talavera G, Vila R. 2016. Integrative analyses unveil speciation linked to host plant shift in Spialia butterflies. Molecular ecology, 25(17):4267-4284. DOI:10.1111/mec.13756
Hidalgo-Galiana A, Monge M, Biron DG, Canals F, Ribera I, Cieslak A. 2016. Protein expression parallels thermal tolerance and ecologic changes in the diversification of a diving beetle species complex. Heredity, 116(1):114-123. DOI:10.1038/hdy.2015.80
Irles P, Elshaer N, Piulachs MD. 2016. The Notch pathway regulates both the proliferation and differentiation of follicular cells in the panoistic ovary of Blattella germanica. Open Biology, 6(1). DOI:10.1098/rsob.150197
Julià A, González I, Fernández-Nebro A, Blanco F, Rodriguez L, González A, Cañete JD, Maymó J, Alperi-López M, Olivé A, Corominas H, Martínez-Taboada V, Erra A, Sánchez-Fernández S, Alonso A, Lopez-Lasanta M, Tortosa R, Codó L, Gelpi JL, García-Montero AC, Bertranpetit J, Absher D, Bridges SL Jr, Myers RM, Tornero J, Marsal S. 2016. A genome-wide association study identifies SLC8A3 as a susceptibility locus for ACPA-positive rheumatoid arthritis. Rheumatology (United Kingdom), 55(6):1106-1111. DOI:10.1093/rheumatology/kew035
Kaminski LA, Iserhard CA, Freitas AVL. 2016. Thisbe silvestre sp. nov. (Lepidoptera: Riodinidae): A new myrmecophilous butterfly from the Brazilian Atlantic Forest. Austral Entomology, 55(2):138-146. DOI:10.1111/aen.12159
Koblmüller S, Vilà C, Lorente-Galdos B, Dabad M, Ramirez O, Marques-Bonet T, Wayne RK, Leonard JA. 2016. Whole mitochondrial genomes illuminate ancient intercontinental dispersals of grey wolves (Canis lupus). Journal of Biogeography, 43(9):1728-1738. DOI:10.1111/jbi.12765
Kuhlwilm M, Gronau I, Hubisz MJ, de Filippo C, Prado-Martinez J, Kircher M, Fu Q, Burbano HA, Lalueza-Fox C, de la Rasilla M, Rosas A, Rudan P, Brajkovic D, Kucan Ž, Gušic I, Marques-Bonet T, Andrés AM, Viola B, Pääbo S, Meyer M, Siepel A, Castellano S. 2016. Ancient gene flow from early modern humans into Eastern Neanderthals. Nature, 530(7591):429-433. DOI:10.1038/nature16544
Kuhlwilm M, de Manuel M, Nater A, Greminger MP, Krützen M, Marques-Bonet T. 2016. Evolution and demography of the great apes. Current Opinion in Genetics and Development, 41:124-129. DOI:10.1016/j.gde.2016.09.005
Lazaridis I, Nadel D, Rollefson G, Merrett DC, Rohland N, Mallick S, Fernandes D, Novak M, Gamarra B, Sirak K, Connell S, Stewardson K, Harney E, Fu Q, Gonzalez-Fortes G, Jones ER, Roodenberg SA, Lengyel G, Bocquentin F, Gasparian B, Monge JM, Gregg M, Eshed V, Mizrahi AS, Meiklejohn C, Gerritsen F, Bejenaru L, Blüher M, Campbell A, Cavalleri G, Comas D, Froguel P, Gilbert E, Kerr SM, Kovacs P, Krause J, McGettigan D, Merrigan M, Merriwether DA, O'Reilly S, Richards MB, Semino O, Shamoon-Pour M, Stefanescu G, Stumvoll M, Tönjes A, Torroni A, Wilson JF, Yengo L, Hovhannisyan NA, Patterson N, Pinhasi R, Reich D. 2016. Genomic insights into the origin of farming in the ancient Near East. Nature, 536(7617):419-424. DOI:10.1038/nature19310
Lobon I, Tucci S, de Manuel M, Ghirotto S, Benazzo A, Prado-Martinez J, Lorente-Galdos B, Nam K, Dabad M, Hernandez-Rodriguez J, Comas D, Navarro A, Schierup MH, Andres AM, Barbujani G, Hvilsom C, Marques-Bonet T. 2016. Demographic history of the genus Pan inferred from whole mitochondrial genome reconstructions. Genome Biology and Evolution, 8(6):2020-2030. DOI:10.1093/gbe/evw124
López-Panadès E, Casacuberta E. 2016. NAP-1, Nucleosome assembly protein 1, a histone chaperone involved in Drosophila telomeres. Insect Biochemistry and Molecular Biology, 70:111-115. DOI:10.1016/j.ibmb.2015.11.011
Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs MD, Cristino AS, Pinheiro DG, Simões ZL. 2016. MicroRNA signatures characterizing caste-independent ovarian activity in queen and worker honeybees (A pis mellifera L.). Insect Molecular Biology, 25(3):216-226. DOI:10.1111/imb.12214
Macia J, Manzoni R, Conde N, Urrios A, de Nadal E, Solé R, Posas F. 2016. Implementation of Complex Biological Logic Circuits Using Spatially Distributed Multicellular Consortia. PLoS Computational Biology, 12(2):1-24. DOI:10.1371/journal.pcbi.1004685
Maia JP, Carranza S, Harris DJ. 2016. Comments on the Systematic Revision of Adeleid Haemogregarines: Are More Data Needed?. Journal of Parasitology, 102(5):549. DOI:10.1645/15-930
Maia JP, Harris DJ, Carranza S, Goméz-Díaz E. 2016. Assessing the diversity, host-specificity and infection patterns of apicomplexan parasites in reptiles from Oman, Arabia. Parasitology, 143(13):1730-1747. DOI:10.1017/S0031182016001372
Maia JP, Harris DJ, Carranza S. 2016. Reconstruction of the evolutionary history of Haemosporida (Apicomplexa) based on the cyt b gene with characterization of Haemocystidium in geckos (Squamata: Gekkota) from Oman. Parasitology International, 65(1):5-11. DOI:10.1016/j.parint.2015.09.003
Mallick S, Li H, Lipson M, Mathieson I, Gymrek M, Racimo F, Zhao M, Chennagiri N, Nordenfelt S, Tandon A, Skoglund P, Lazaridis I, Sankararaman S, Fu Q, Rohland N, Renaud G, Erlich Y, Willems T, Gallo C, Spence JP, Song YS, Poletti G, Balloux F, van Driem G, de Knijff P, Romero IG, Jha AR, Behar DM, Bravi CM, Capelli C, Hervig T, Moreno-Estrada A, Posukh OL, Balanovska E, Balanovsky O, Karachanak-Yankova S, Sahakyan H, Toncheva D, Yepiskoposyan L, Tyler-Smith C, Xue Y, Abdullah MS, Ruiz-Linares A, Beall CM, Di Rienzo A, Jeong C, Starikovskaya EB, Metspalu E, Parik J, Villems R, Henn BM, Hodoglugil U, Mahley R, Sajantila A, Stamatoyannopoulos G, Wee JT, Khusainova R, Khusnutdinova E, Litvinov S, Ayodo G, Comas D, Hammer MF, Kivisild T, Klitz W, Winkler CA, Labuda D, Bamshad M, Jorde LB, Tishkoff SA, Watkins WS, Metspalu M, Dryomov S, Sukernik R, Singh L, Thangaraj K, Pääbo S, Kelso J, Patterson N, Reich D. 2016. The Simons Genome Diversity Project: 300 genomes from 142 diverse populations. Nature, 538(7624):201-206. DOI:10.1038/nature18964
Mansilla A, Martin FA, Martin D, Ferrus A. 2016. Ligand-independent requirements of steroid receptors EcR and USP for cell survival. Cell Death and Differentiation, 23(3):405-416. DOI:10.1038/cdd.2015.108
Marsden CD, Ortega-Del Vecchyo D, O'Brien DP, Taylor JF, Ramirez O, Vilà C, Marques-Bonet T, Schnabel RD, Wayne RK, Lohmueller KE. 2016. Bottlenecks and selective sweeps during domestication have increased deleterious genetic variation in dogs. Proceedings of the National Academy of Sciences of the United States of America, 113(1):152-157. DOI:10.1073/pnas.1512501113
Martínez-Cruz B, Mendizabal I, Harmant C, de Pablo R, Ioana M, Angelicheva D, Kouvatsi A, Makukh H, Netea MG, Pamjav H, Zalán A, Tournev I, Marushiakova E, Popov V, Bertranpetit J, Kalaydjieva L, Quintana-Murci L, Comas D. 2016. Origins, admixture and founder lineages in European Roma. European Journal of Human Genetics, 24(6):937-943. DOI:10.1038/ejhg.2015.201
Mendes J, Harris DJ, Carranza S, Salvi D. 2016. Evaluating the phylogenetic signal limit from mitogenomes, slow evolving nuclear genes, and the concatenation approach. New insights into the Lacertini radiation using fast evolving nuclear genes and species trees. Molecular Phylogenetics and Evolution, 100:254-267. DOI:10.1016/j.ympev.2016.04.016
Mieth B, Kloft M, Rodríguez JA, Sonnenburg S, Vobruba R, Morcillo-Suárez C, Farré X, Marigorta UM, Fehr E, Dickhaus T, Blanchard G, Schunk D, Navarro A, Müller KR. 2016. Combining multiple hypothesis testing with machine learning increases the statistical power of genome-wide association studies. Scientific Reports, 6(November):1-14. DOI:10.1038/srep36671
Mondal M, Casals F, Xu T, Dall'Olio GM, Pybus M, Netea MG, Comas D, Laayouni H, Li Q, Majumder PP, Bertranpetit J. 2016. Genomic analysis of Andamanese provides insights into ancient human migration into Asia and adaptation. Nature Genetics, 48(9):1066-1070. DOI:10.1038/ng.3621
Morgan PPG. 2016. Mitochondria Research Society/United Mitochondrial Disease Foundation Meeting Abstracts. Mitochondrion, 31:89-117. DOI:10.1016/j.mito.2016.08.010
Morinière J, Van Dam MH, Hawlitschek O, Bergsten J, Michat MC, Hendrich L, Ribera I, Toussaint EF, Balke M. 2016. Phylogenetic niche conservatism explains an inverse latitudinal diversity gradient in freshwater arthropods. Scientific Reports, 6(May):1-12. DOI:10.1038/srep26340
Mutanen M, Kivelä SM, Vos RA, Doorenweerd C, Ratnasingham S, Hausmann A, Huemer P, Dincă V, van Nieukerken EJ, Lopez-Vaamonde C, Vila R, Aarvik L, Decaëns T, Efetov KA, Hebert PD, Johnsen A, Karsholt O, Pentinsaari M, Rougerie R, Segerer A, Tarmann G, Zahiri R, Godfray HC. 2016. Species-level para- and polyphyly in DNA barcode gene trees: Strong operational bias in European Lepidoptera. Systematic Biology, 65(6):1024-1040. DOI:10.1093/sysbio/syw044
Naghdi M, Maestro JL, Belles X, Bandani A. 2016. Transduction of the vitellogenic signal of juvenile hormone by Methoprene-tolerant in the cockroach Blattella germanica (L.) (Dictyoptera, Blattellidae). Arthropods, 5(4):130-137
Najle SR, Molina MC, Ruiz-Trillo I, Uttaro AD. 2016. Sterol metabolism in the filasterean Capsaspora owczarzaki has features that resemble both fungi and animals. Open Biology, 6(7). DOI:10.1098/rsob.160029
Nguyen DT, Gómez-Zurita J. 2016. Subtle ecological gradient in the tropics triggers high species-turnover in a local geographical scale. PLoS ONE, 11(6):1-26. DOI:10.1371/journal.pone.0156840
Ollé-Vila A, Duran-Nebreda S, Conde-Pueyo N, Montañez R, Solé R. 2016. A morphospace for synthetic organs and organoids: the possible and the actual. Integrative Biology (United Kingdom, 8(4):485-503. DOI:10.1039/c5ib00324e
O’Malley MA, Wideman JG, Ruiz-Trillo I. 2016. Losing Complexity: The Role of Simplification in Macroevolution. Trends in Ecology and Evolution, 31(8):608-621. DOI:10.1016/j.tree.2016.04.004
Pinho C, Faria R. 2016. Magadi tilapia ecological specialization: Filling the early gap in the speciation continuum. Molecular Ecology, 25(7):1420-1422. DOI:10.1111/mec.13598
Querejeta M, González-Esteban J, Gómez A, Fernández-González A, Aymerich P, Gosálbez J, Escoda L, Igea J, Castresana J. 2016. Genomic diversity and geographical structure of the Pyrenean desman. Conservation Genetics, 17(6):1333-1344. DOI:10.1007/s10592-016-0865-y
Rato C, Harris DJ, Carranza S, Machado L, Perera A. 2016. The taxonomy of the Tarentola mauritanica species complex (Gekkota: Phyllodactylidae): Bayesian species delimitation supports six candidate species. Molecular Phylogenetics and Evolution, 94(July):271-278. DOI:10.1016/j.ympev.2015.09.008
Rudoy A, Beutel RG, Ribera I. 2016. Evolution of the male genitalia in the genus Limnebius Leach, 1815 (Coleoptera, Hydraenidae). Zoological Journal of the Linnean Society, 178(1):97-127. DOI:10.1111/zoj.12402
Rudoy A, Ribera I. 2016. The macroevolution of size and complexity in insect male genitalia. PeerJ, 2016(4). DOI:10.7717/peerj.1882
Ruiz-Trillo I, Paps J. 2016. Acoelomorpha: earliest branching bilaterians or deuterostomes?. Organisms Diversity and Evolution, 16(2):391-399. DOI:10.1007/s13127-015-0239-1
Sanchez-Delgado M, Court F, Vidal E, Medrano J, Monteagudo-Sánchez A, Martin-Trujillo A, Tayama C, Iglesias-Platas I, Kondova I, Bontrop R, Poo-Llanillo ME, Marques-Bonet T, Nakabayashi K, Simón C, Monk D. 2016. Human Oocyte-Derived Methylation Differences Persist in the Placenta Revealing Widespread Transient Imprinting. PLoS Genetics, 12(11):1-23. DOI:10.1371/journal.pgen.1006427
Sánchez-Fernández D, Rizzo V, Cieslak A, Faille A, Fresneda J, Ribera I. 2016. Thermal niche estimators and the capability of poor dispersal species to cope with climate change. Scientific Reports, 6:1-8. DOI:10.1038/srep23381
Santos CG, Fernandez-Nicolas A, Belles X. 2016. Smads and insect hemimetabolan metamorphosis. Developmental Biology, 417(1):104-113. DOI:10.1016/j.ydbio.2016.07.006
Santpere G, Lopez-Valenzuela M, Petit-Marty N, Navarro A, Espinosa-Parrilla Y. 2016. Differences in molecular evolutionary rates among microRNAs in the human and chimpanzee genomes. BMC Genomics, 17(1):1-12. DOI:10.1186/s12864-016-2863-3
Sebé-Pedrós A, Ballaré C, Parra-Acero H, Chiva C, Tena JJ, Sabidó E, Gómez-Skarmeta JL, Di Croce L, Ruiz-Trillo I. 2016. The Dynamic Regulatory Genome of Capsaspora and the Origin of Animal Multicellularity. Cell, 165(5):1224-1237. DOI:10.1016/j.cell.2016.03.034
Sebé-Pedrós A, Peña MI, Capella-Gutiérrez S, Antó M, Gabaldón T, Ruiz-Trillo I, Sabidó E. 2016. High-Throughput Proteomics Reveals the Unicellular Roots of Animal Phosphosignaling and Cell Differentiation. Developmental Cell, 39(2):186-197. DOI:10.1016/j.devcel.2016.09.019
Shtinkov N, Kolev Z, Vila R, Dincă V. 2016. The sibling species Leptidea juvernica and L. sinapis (Lepidoptera, Pieridae) in the Balkan Peninsula: Ecology, genetic structure, and morphological variation. Zoology, 119(1):11-20. DOI:10.1016/j.zool.2015.12.003
Šíchová J, Ohno M, Dincă V, Watanabe M, Sahara K, Marec F. 2016. Fissions, fusions, and translocations shaped the karyotype and multiple sex chromosome constitution of the northeast-Asian wood white butterfly, Leptidea amurensis. Biological Journal of the Linnean Society, 118(3):457-471. DOI:10.1111/bij.12756
Solé R. 2016. Synthetic transitions: Towards a new synthesis. Philosophical Transactions of the Royal Society B: Biological Sciences, 371(1701). DOI:10.1098/rstb.2015.0438
Solé R. 2016. The major synthetic evolutionary transitions. Philosophical Transactions of the Royal Society B: Biological Sciences, 371(1701). DOI:10.1098/rstb.2016.0175
Solé R, Amor DR, Duran-Nebreda S, Conde-Pueyo N, Carbonell-Ballestero M, Montañez R. 2016. Synthetic collective intelligence. BioSystems, 148:47-61. DOI:10.1016/j.biosystems.2016.01.002
Solé R, Amor DR, Valverde S. 2016. On singularities and black holes in combination-driven models of technological innovation networks. PLoS ONE, 11(1):1-13. DOI:10.1371/journal.pone.0146180
Stange J, Dickhaus T, Navarro A, Schunk D. 2016. Multiplicity- and dependency-adjusted p-values for control of the family-wise error rate. Statistics and Probability Letters, 111:32-40. DOI:10.1016/j.spl.2016.01.005
Steels L, Szathmary E. 2016. Fluid Construction Grammar as a Biological System. Linguistics Vanguard 2(1): 20150022.
Steels L. 2016. Agent-based models for the emergence and evolution of grammar. Philosophical Transactions of the Royal Society B: Biological Sciences, 371(1701). DOI:10.1098/rstb.2015.0447
Steels L. 2016. I’m gonna have to science the shit out of this. Comment on “Towards a Computational Comparative Neuroprimatology: Framing the language-ready brain” by Michael A. Arbib. Physics of Life Reviews, 16:96-98. DOI:10.1016/j.plrev.2016.02.002
Steels L, Loetzsch M, Spranger M. 2016. A boy named Sue. Belgian Journal of Linguistics, 30:147-169. DOI:10.1075/bjl.30.07ste
Stefanescu C, Soto DX, Talavera G, Vila R, Hobson KA. 2016. Long-distance autumn migration across the Sahara by painted lady butterflies: Exploiting resource pulses in the tropical savannah. Biology Letters, 12(10):6-9. DOI:10.1098/rsbl.2016.0561
Stefanini I, Dapporto L, Berń L, Polsinelli M, Turillazzi S, Cavalieri D. 2016. Social wasps are a saccharomyces mating nest. Proceedings of the National Academy of Sciences of the United States of America, 113(8):2247-2251. DOI:10.1073/pnas.1516453113
Stevison LS, Woerner AE, Kidd JM, Kelley JL, Veeramah KR, McManus KF; Great Ape Genome Project, Bustamante CD, Hammer MF, Wall JD. 2016. The time scale of recombination rate evolution in great apes. Molecular Biology and Evolution, 33(4):928-945. DOI:10.1093/molbev/msv331
Talavera G, Kaminski LA, Freitas AVL, Vila R. 2016. One-note samba: The biogeographical history of the relict Brazilian butterfly Elkalyce cogina. Journal of Biogeography, 43(4):727-737. DOI:10.1111/jbi.12671
Tamar K, Carranza S, Sindaco R, Moravec J, Trape JF, Meiri S. 2016. Out of Africa: Phylogeny and biogeography of the widespread genus Acanthodactylus (Reptilia: Lacertidae). Molecular Phylogenetics and Evolution, 103:6-18. DOI:10.1016/j.ympev.2016.07.003
Tamar K, Scholz S, Crochet PA, Geniez P, Meiri S, Schmitz A, Wilms T, Carranza S. 2016. Evolution around the Red Sea: Systematics and biogeography of the agamid genus Pseudotrapelus (Squamata: Agamidae) from North Africa and Arabia. Molecular Phylogenetics and Evolution, 97:55-68. DOI:10.1016/j.ympev.2015.12.021
Tamar K, Šmíd J, Göçmen B, Meiri S, Carranza S. 2016. An integrative systematic revision and biogeography of Rhynchocalamus snakes (Reptilia, Colubridae) with a description of a new species from Israel. PeerJ, 2016(12). DOI:10.7717/peerj.2769
Torruella-Loran I, Laayouni H, Dobon B, Gallego A, Balcells I, Garcia-Ramallo E, Espinosa-Parrilla Y. 2016. MicroRNA Genetic Variation: From Population Analysis to Functional Implications of Three Allele Variants Associated with Cancer. Human Mutation, 37(10):1060-1073. DOI:10.1002/humu.23045
Toussaint EFA, Beutel RG, Morinière J, Jia F, Xu S, Michat MC, Zhou X, Bilton DT, Ribera I, Hájek J, Balke M. 2016. Molecular phylogeny of the highly disjunct cliff water beetles from South Africa and China (Coleoptera: Aspidytidae). Zoological Journal of the Linnean Society, 176(3):537-546. DOI:10.1111/zoj.12332
Tuset VM, Otero-Ferrer JL, Gómez-Zurita J, Venerus LA, Stransky C, Imondi R, Orlov AM, Ye Z, Santschi L, Afanasiev PK, Zhuang L, Farré M, Love MS, Lombarte A. 2016. Otolith shape lends support to the sensory drive hypothesis in rockfishes. Journal of Evolutionary Biology, 29(10):2083-2097. DOI:10.1111/jeb.12932
Ureña E, Pirone L, Chafino S, Pérez C, Sutherland JD, Lang V, Rodriguez MS, Lopitz-Otsoa F, Blanco FJ, Barrio R, Martín D. 2016. Evolution of SUMO function and chain formation in insects. Molecular Biology and Evolution, 33(2):568-584. DOI:10.1093/molbev/msv242
Ureña E, Chafino S, Manjón C, Franch-Marro X, Martín D. 2016. The Occurrence of the Holometabolous Pupal Stage Requires the Interaction between E93, Krüppel-Homolog 1 and Broad-Complex. PLoS Genetics, 12(5):1-24. DOi:10.1371/journal.pgen.1006020
Urrios A, Macia J, Manzoni R, Conde N, Bonforti A, de Nadal E, Posas F, Solé R. 2016. A Synthetic Multicellular Memory Device. ACS Synthetic Biology, 5(8):862-873. DOI:10.1021/acssynbio.5b00252
Valles-Ibáñez G de, Hernandez-Rodriguez J, Prado-Martinez J, Luisi P, Marquès-Bonet T, Casals F. 2016. Genetic Load of Loss-of-Function Polymorphic Variants in Great Apes. Genome Biology and Evolution, 8(3):871-877. DOI:10.1093/gbe/evw040
Valverde S. 2016. Major transitions in information technology. Philosophical Transactions of the Royal Society B: Biological Sciences, 371(1701). DOI:10.1098/rstb.2015.0450
Vasconcelos R, Montero-Mendieta S, Simó-Riudalbas M, Sindaco R, Santos X, Fasola M, Llorente G, Razzetti E, Carranza S. 2016. Unexpectedly high levels of cryptic diversity uncovered by a complete DNA barcoding of reptiles of the socotra archipelago. PLoS ONE, 11(3):1-19. DOI:10.1371/journal.pone.0149985
Vodă R, Dapporto L, Dincă V, Shreeve TG, Khaldi M, Barech G, Rebbas K, Sammut P, Scalercio S, Hebert PD, Vila R. 2016. Historical and contemporary factors generate unique butterfly communities on islands. Scientific Reports, 6(May):1-11. DOI:10.1038/srep28828
Willemsen A, Zwart MP, Higueras P, Sardanyés J, Elena SF. 2016. Predicting the stability of homologous gene duplications in a plant RNA virus. Genome Biology and Evolution, 8(9):3065-3082. DOI:10.1093/gbe/evw219
Ylla G, Fromm B, Piulachs MD, Belles X. 2016. The microRNA toolkit of insects. Scientific Reports, 6(November):1-13. DOI:10.1038/srep37736
Beutel RG, Ribera I. 2016. 7. Adephaga Schellenberg, 1806. In: Beutel, R.G. & Leschen, R.A.B. (eds.): Handbook of Zoology, Arthropoda: Insecta. Coleoptera, Beetles. Vol. 1: Morphology and Systematics (Archostemata, Adephaga, Myxophaga, Polyphaga partim). 2nd Edition. Walter de Gruyter, Berlin. pp. 77-79.
Beutel RG, Balke M, Ribera I. 2016. 7.7. Aspidytidae Ribera,Beutel, Balke and Vogler, 2002. In: Beutel, R.G. & Leschen, R.A.B. (eds.): Handbook of Zoology, Arthropoda: Insecta. Coleoptera, Beetles. Vol. 1: Morphology and Systematics (Archostemata, Adephaga, Myxophaga, Polyphaga partim). 2nd Edition. Walter de Gruyter, Berlin. pp. 141-149.
Bosch E, Casals F. Chapter 15: Next-generation sequencing for rare diseases in book Genome-Wide Association Studies: From Polymorphism to Personalized Medicine, edited by Dr. Krishnarao Appasani, Cambridge University Press. 2016. ISBN: 978-1-107-04276-6.
Casals F, Bosch E. Chapter 16: Next-generation sequencing for complex disorders. In: Genome-Wide Association Studies: From Polymorphism to Personalized Medicine, edited by Dr. Krishnarao Appasani, Cambridge University Press. 2016. ISBN: 978-1-107-04276-6.
Hernando C, Ribera I. 2016. Family Limnichidae. In: Löbl, I. & Löbl, D. (eds) Catalogue of Palaearctic Coleoptera: Volume 3. Scarabaeoidea Scirtoidea Dascilloidea Buprestoidea - Byrrhoidea. Revised and Updated Edition. Brill, Leiden, pp. 607-610.
Hernando C, Ribera I. 2016. 19.5. Limnichidae Erichson, 1846. In: Beutel, R.G. & Leschen, R.A.B. (eds.): Handbook of Zoology, Arthropoda: Insecta. Coleoptera, Beetles. Vol. 1: Morphology and Systematics (Archostemata, Adephaga, Myxophaga, Polyphaga partim). 2nd Edition. Walter de Gruyter, Berlin. pp. 605-612.
Jackson B, Butlin R, Navarro A, Faria R. 2016. Chromosomal Rearrangements and Speciation. In: Encyclopedia of Evolutionary Biology. Ed: R. M. Kliman, Vol. 4, pp. 149–158. Academic Press (Oxford).
Lalueza-Fox, C. 2016. Genes, reyes e impostores. Editorial Calamo
Marigorta UM, Rodriguez JA, Navarro A. 2016. GWAS: a milestone in the road from genotypes to phenotypes. In: Genome-Wide Association Studies: From Polymorphism to Personalized Medicine. Ed: K.Appasani. ISBN: 9781107042766. Cambridge University Press (Cambridge).
Marigorta UM, Rodriguez JA, Navarro A. 2016. GWAS replicability across time and space. In: Genome-Wide Association Studies: From Polymorphism to Personalized Medicine. Ed: K. Appasani. ISBN: 9781107042766. Cambridge University Press (Cambridge).
Maes, J.M. and Gómez-Zurita, J. 2016. Chrysomelidae (Coleoptera) de Nicaragua, Parte IV, Chrysomelinae. Revista Nicaragüense de Entomología 76(4): 3-94.
Maes, J.M.; Gómez-Zurita, J.; Riley, E.G.; Windsor, D.; Borowiec, L. and Chaboo, C.S. 2016. Chrysomelidae de Nicaragua, Parte VIII, Cassidinae sensu stricto (tortoise beetles). Revista Nicaragüense de Entomología 76(8): 3-189.
Maes, J.M.; Gómez-Zurita, J. and Staines, C.L. 2016. Chrysomelidae (Coleoptera) de Nicaragua, Parte IX, Cassidinae Hispinos. Revista Nicaragüense de Entomología 76(9): 3-201.
Monasterio, Y., de Freina, J.J., Antonietty, C.A. & Vila R. (2016). Descrita una nueva especie de mariposa nocturna. Quercus 361:45-47
Solé, R.V.; Montañez, R.; and Duran-Nebreda, S. 2016. Hacia una bioingeniería del planeta. Investigación y Ciencia 477